Pseudomonas protegens Pf-5, PFL_0707

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfl02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfl02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 339 648 3.01E-74
Gene3D G3DSA:1.10.287.950 - - - 317 648 1.1E-72
Gene3D G3DSA:3.30.450.20 PAS domain - - 86 189 2.0E-13
Pfam PF00672 HAMP domain IPR003660 HAMP domain 316 367 1.2E-6
Gene3D G3DSA:3.30.450.20 PAS domain - - 190 298 7.5E-18
SMART SM00304 HAMP_11 IPR003660 HAMP domain 317 371 9.7E-7
CDD cd12912 PDC2_MCP_like - - 197 285 2.81687E-12
MobiDBLite mobidb-lite consensus disorder prediction - - 427 446 -
CDD cd06225 HAMP - - 320 366 1.10148E-6
FunFam G3DSA:1.10.287.950:FF:000001 Methyl-accepting chemotaxis sensory transducer - - 317 648 1.0E-92
Pfam PF02743 Cache domain IPR033479 Double Cache domain 1 47 279 3.0E-24
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 64 647 1.1E-108
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 386 647 2.2E-71
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 431 612 1.1E-40
CDD cd11386 MCP_signal - - 413 611 1.23904E-55
Coils Coil Coil - - 454 474 -
SUPERFAMILY SSF103190 Sensory domain-like IPR029151 Periplasmic sensor-like domain superfamily 113 204 9.42E-7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.