Pseudomonas protegens Pf-5, PFL_1330 (emhC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015562 efflux transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02321
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfl02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfl01501 beta-Lactam resistance 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF02321 Outer membrane efflux protein IPR003423 Outer membrane efflux protein 65 255 6.3E-25
NCBIfam TIGR01845 JCVI: efflux transporter outer membrane subunit IPR010131 RND efflux system, outer membrane lipoprotein, NodT 10 465 0.0
Gene3D G3DSA:1.20.1600.10 Outer membrane efflux proteins (OEP) - - 56 465 0.0
Gene3D G3DSA:2.20.200.10 Outer membrane efflux proteins (OEP) - - 102 354 0.0
Coils Coil Coil - - 229 249 -
SUPERFAMILY SSF56954 Outer membrane efflux proteins (OEP) - - 3 467 1.44E-117
PANTHER PTHR30203 OUTER MEMBRANE CATION EFFLUX PROTEIN - - 4 469 1.4E-106
Pfam PF02321 Outer membrane efflux protein IPR003423 Outer membrane efflux protein 281 463 2.2E-29

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.