Pseudomonas protegens Pf-5, PFL_3834
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF03869
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.1220.10
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF03869 | Arc-like DNA binding domain | IPR005569 | Arc-like DNA binding domain | 18 | 55 | 2.9E-10 |
| Gene3D | G3DSA:1.10.1220.10 | - | IPR013321 | Arc-type ribbon-helix-helix | 18 | 64 | 2.1E-15 |
| SUPERFAMILY | SSF47598 | Ribbon-helix-helix | IPR010985 | Ribbon-helix-helix | 17 | 55 | 1.52E-11 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.