Pseudomonas protegens Pf-5, PFL_3846

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008270 zinc ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01844
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01844
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004519 endonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01844
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00507 HNH_5 IPR003615 HNH nuclease 166 230 0.0096
Pfam PF01844 HNH endonuclease IPR002711 HNH endonuclease 180 235 1.4E-7
CDD cd00085 HNHc IPR003615 HNH nuclease 177 233 2.29987E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.