Pseudomonas protegens Pf-5, PFL_4279

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_4279
Name
Replicon chromosome
Genomic location 4973951 - 4974634 (+ strand)

Cross-References

RefSeq YP_261371.1
GI 70731630
Entrez 3477405
INSDC AAY93535.1
NCBI Locus Tag PFL_4279
UniParc UPI000054DBA9
UniProtKB Acc Q4K8R2
UniProtKB ID Q4K8R2_PSEF5
UniRef100 UniRef100_Q4K8R2
UniRef50 UniRef50_A0A0B7DDC9
UniRef90 UniRef90_A0A0B7DDC9

Product

Feature Type CDS
Coding Frame 1
Product Name
ABC transporter ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7) -8.58
Kyte-Doolittle Hydrophobicity Value -0.099
Molecular Weight (kDa) 24.5
Isoelectric Point (pI) 4.87

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002712 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_4279

Human Homologs

Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily A member 9 [Source:HGNC Symbol;Acc:HGNC:39]
E-value: 7.2e-14
Percent Identity: 28.6
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40]
E-value: 7.2e-14
Percent Identity: 31.1
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily A member 9 [Source:HGNC Symbol;Acc:HGNC:39]
E-value: 7.2e-14
Percent Identity: 28.6
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40]
E-value: 7.2e-14
Percent Identity: 31.1
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40]
E-value: 7.2e-14
Percent Identity: 31.1

References

No references are associated with this feature.