Pseudomonas protegens Pf-5, PFL_6087 (tssB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_6087
Name
tssB
Replicon chromosome
Genomic location 6914043 - 6914558 (+ strand)

Cross-References

RefSeq YP_263145.1
GI 70733370
Entrez 3480457
INSDC AAY95275.1
NCBI Locus Tag PFL_6087
UniParc UPI000054E27E
UniProtKB Acc Q4K3N8
UniProtKB ID Q4K3N8_PSEF5
UniRef100 UniRef100_Q4K3N8
UniRef50 UniRef50_Q4K3N8
UniRef90 UniRef90_Q4K3N8

Product

Feature Type CDS
Coding Frame 1
Product Name
type VI secretion protein TssB
Synonyms
Evidence for Translation
Charge (pH 7) -4.76
Kyte-Doolittle Hydrophobicity Value -0.202
Molecular Weight (kDa) 18.7
Isoelectric Point (pI) 4.73

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
4UQZ PROTEIN TRANSPORT 06/25/14 Coevolution of the ATPase ClpV, the TssB-TssC Sheath and the Accessory HsiE Protein Distinguishes Two Type VI Secretion Classes PSEUDOMONAS AERUGINOSA PAO1 1.599 X-RAY DIFFRACTION 93.4
5N8N STRUCTURAL PROTEIN 02/23/17 Contracted sheath of a Pseudomonas aeruginosa type six secretion system consisting of TssB1 and TssC1 Pseudomonas aeruginosa 3.28 ELECTRON MICROSCOPY 94.6

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 106 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000082 (1224 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_6087
Search term: tssB

Human Homologs

References

No references are associated with this feature.