Pseudomonas protegens CHA0, PFLCHA0_c13100 (oprF1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005509 calcium ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF103647
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01021
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 125 147 5.9E-15
PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature - - 171 188 2.2E-5
MobiDBLite mobidb-lite consensus disorder prediction - - 202 229 -
SUPERFAMILY SSF103647 TSP type-3 repeat IPR028974 TSP type-3 repeat 69 101 7.59E-9
FunFam G3DSA:3.30.1330.60:FF:000021 Outer membrane protein OmpA - - 107 229 1.1E-81
SUPERFAMILY SSF103088 OmpA-like IPR036737 OmpA-like domain superfamily 102 227 1.12E-34
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 156 171 5.9E-15
Gene3D G3DSA:4.10.1080.10 - IPR028974 TSP type-3 repeat 59 103 4.5E-5
PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature - - 210 229 2.2E-5
Gene3D G3DSA:3.30.1330.60 - IPR036737 OmpA-like domain superfamily 107 229 1.1E-38
Pfam PF00691 OmpA family IPR006665 OmpA-like domain 125 221 3.1E-23
CDD cd07185 OmpA_C-like IPR006665 OmpA-like domain 120 227 3.19942E-45
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 171 187 5.9E-15
PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature - - 112 139 2.2E-5
PANTHER PTHR30329 STATOR ELEMENT OF FLAGELLAR MOTOR COMPLEX - - 117 228 3.0E-31

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.