Pseudomonas protegens CHA0, PFLCHA0_c13100 (oprF1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest
Locus Tag
PFLCHA0_c13100
Name
oprF1
Replicon chromosome
Genomic location 1462375 - 1463064 (+ strand)

Cross-References

RefSeq YP_007998604.1
GI 501678778
Entrez 15559226
NCBI Locus Tag PFLCHA0_c13100

Product

Feature Type CDS
Coding Frame 1
Product Name
outer membrane porin F
Synonyms
Evidence for Translation
Charge (pH 7) -1.95
Kyte-Doolittle Hydrophobicity Value -0.186
Molecular Weight (kDa) 23989.8
Isoelectric Point (pI) 6.35

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 416 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001003 (477 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c13100
Search term: oprF1

Human Homologs

References

No references are associated with this feature.