Pseudomonas protegens CHA0, PFLCHA0_c13460 (gcvA6)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 22 78 3.0E-22
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 56 67 1.3E-9
FunFam G3DSA:1.10.10.10:FF:000038 Glycine cleavage system transcriptional activator - - 17 101 3.2E-31
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 35 46 1.3E-9
CDD cd08432 PBP2_GcdR_TrpI_HvrB_AmpR_like - - 107 294 3.87709E-56
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 16 97 9.07E-23
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 17 99 5.4E-26
Gene3D G3DSA:3.40.190.10 - - - 110 294 9.6E-47
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 102 297 4.1E-31
Gene3D G3DSA:3.40.190.10 - - - 176 266 9.6E-47
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 20 298 2.9E-75
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 103 299 1.81E-33
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 46 56 1.3E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.