Pseudomonas protegens CHA0, PFLCHA0_c32690 (bepF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain 62 287 7.0E-15
PANTHER PTHR30158:SF10 HLYD FAMILY SECRETION PROTEIN - - 6 389 0.0
Coils Coil Coil - - 103 123 -
TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit IPR006143 RND efflux pump, membrane fusion protein 38 368 2.4E-77
SUPERFAMILY SSF111369 HlyD-like secretion proteins - - 52 291 4.71E-70
Gene3D G3DSA:2.40.30.170 - - - 56 277 7.9E-67
Gene3D G3DSA:2.40.420.20 - - - 278 369 1.3E-16
Gene3D G3DSA:1.10.287.470 Helix hairpin bin - - 97 170 7.9E-67
Gene3D G3DSA:2.40.50.100 - - - 62 205 7.9E-67
PANTHER PTHR30158 ACRA/E-RELATED COMPONENT OF DRUG EFFLUX TRANSPORTER - - 6 389 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.