Pseudomonas protegens CHA0, PFLCHA0_c32730
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0005515 | protein binding |
Inferred from Sequence Model
Term mapped from: InterPro:SSF48452
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | IPR011990 | Tetratricopeptide-like helical domain superfamily | 131 | 351 | 2.2E-25 |
| Coils | Coil | Coil | - | - | 286 | 306 | - |
| SMART | SM00028 | tpr_5 | IPR019734 | Tetratricopeptide repeat | 277 | 310 | 71.0 |
| SMART | SM00028 | tpr_5 | IPR019734 | Tetratricopeptide repeat | 243 | 276 | 190.0 |
| SMART | SM00028 | tpr_5 | IPR019734 | Tetratricopeptide repeat | 175 | 208 | 0.022 |
| PANTHER | PTHR44858 | TETRATRICOPEPTIDE REPEAT PROTEIN 6 | - | - | 157 | 313 | 9.8E-11 |
| Pfam | PF14559 | Tetratricopeptide repeat | - | - | 157 | 210 | 9.7E-6 |
| SUPERFAMILY | SSF48371 | ARM repeat | IPR016024 | Armadillo-type fold | 51 | 149 | 9.05E-6 |
| SUPERFAMILY | SSF48452 | TPR-like | IPR011990 | Tetratricopeptide-like helical domain superfamily | 141 | 347 | 2.44E-19 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.