Pseudomonas protegens CHA0, PFLCHA0_c35000
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pprc02024 | Quorum sensing | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF13416 | Bacterial extracellular solute-binding protein | IPR006059 | Bacterial extracellular solute-binding protein | 55 | 301 | 1.5E-37 |
| Gene3D | G3DSA:3.40.190.10 | - | - | - | 128 | 253 | 1.7E-111 |
| PANTHER | PTHR30006 | THIAMINE-BINDING PERIPLASMIC PROTEIN-RELATED | - | - | 13 | 346 | 2.0E-34 |
| Gene3D | G3DSA:3.40.190.10 | - | - | - | 31 | 343 | 1.7E-111 |
| SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | - | - | 26 | 343 | 3.11E-58 |
| CDD | cd13589 | PBP2_polyamine_RpCGA009 | - | - | 27 | 294 | 8.61453E-83 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.