Pseudomonas protegens CHA0, PFLCHA0_c38670 (ybgF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0055085 | transmembrane transport |
Inferred from Sequence Model
Term mapped from: InterPro:PF00324
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:PF00324
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PIRSF | PIRSF006060 | AA_transporter | - | - | 2 | 479 | 6.3E-77 |
| FunFam | G3DSA:1.20.1740.10:FF:000001 | Amino acid permease | - | - | 17 | 468 | 0.0 |
| Pfam | PF00324 | Amino acid permease | IPR004841 | Amino acid permease/ SLC12A domain | 26 | 460 | 5.9E-117 |
| Gene3D | G3DSA:1.20.1740.10 | Amino acid/polyamine transporter I | - | - | 18 | 474 | 2.1E-92 |
| PANTHER | PTHR43495 | GABA PERMEASE | - | - | 8 | 467 | 0.0 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.