Pseudomonas protegens CHA0, PFLCHA0_c38770 (degU1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00448
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46894
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00196
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 184 196 7.1E-12
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 154 168 7.1E-12
CDD cd00156 REC IPR001789 Signal transduction response regulator, receiver domain 9 122 2.23638E-30
Pfam PF00196 Bacterial regulatory proteins, luxR family IPR000792 Transcription regulator LuxR, C-terminal 153 206 3.7E-15
CDD cd06170 LuxR_C_like IPR000792 Transcription regulator LuxR, C-terminal 154 207 5.74795E-14
ProSiteProfiles PS50043 LuxR-type HTH domain profile. IPR000792 Transcription regulator LuxR, C-terminal 147 212 21.5
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 8 118 2.8E-25
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 168 184 7.1E-12
SUPERFAMILY SSF52172 IPR011006 CheY-like superfamily 5 133 1.37E-31
SUPERFAMILY SSF46894 IPR016032 Signal transduction response regulator, C-terminal effector 146 214 3.74E-18
ProSiteProfiles PS50110 Response regulatory domain profile. IPR001789 Signal transduction response regulator, receiver domain 6 122 38.827
Gene3D G3DSA:3.40.50.12740 5 214 3.0E-64
SMART SM00448 IPR001789 Signal transduction response regulator, receiver domain 5 118 7.3E-28
SMART SM00421 IPR000792 Transcription regulator LuxR, C-terminal 151 208 4.2E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.