Pseudomonas protegens CHA0, PFLCHA0_c41120 (ampR2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pprc01501 beta-Lactam resistance 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd08488 PBP2_AmpR - - 95 285 3.03023E-129
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 6 289 2.5E-72
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 83 290 1.18E-35
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 34 44 2.7E-8
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 2 86 1.26E-22
Gene3D G3DSA:3.40.190.10 - - - 164 259 3.5E-63
Gene3D G3DSA:3.40.190.10 - - - 98 285 3.5E-63
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 23 34 2.7E-8
FunFam G3DSA:1.10.10.10:FF:000038 Glycine cleavage system transcriptional activator - - 6 88 2.2E-31
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 8 67 1.5E-19
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 2 87 3.0E-23
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 91 289 1.4E-35
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 44 55 2.7E-8

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.