Pseudomonas protegens CHA0, PFLCHA0_c41250

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00419	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00419	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF51206	cAMP-binding domain-like	IPR018490	Cyclic nucleotide-binding domain superfamily	10	137	2.23E-15
CDD	cd00038	CAP_ED	IPR000595	Cyclic nucleotide-binding domain	12	126	1.98516E-11
PANTHER	PTHR24567	CRP FAMILY TRANSCRIPTIONAL REGULATORY PROTEIN	-	-	12	228	5.3E-20
SMART	SM00419	crpmeuga4	IPR012318	Crp-type HTH domain	163	210	4.3E-6
SUPERFAMILY	SSF46785	Winged helix DNA-binding domain	IPR036390	Winged helix DNA-binding domain superfamily	147	222	1.06E-17
SMART	SM00100	cnmp_10	IPR000595	Cyclic nucleotide-binding domain	12	130	1.0E-9
Pfam	PF13545	Crp-like helix-turn-helix domain	IPR012318	Crp-type HTH domain	150	216	9.8E-15
Gene3D	G3DSA:2.60.120.10	Jelly Rolls	IPR014710	RmlC-like jelly roll fold	20	218	9.3E-32
Pfam	PF00027	Cyclic nucleotide-binding domain	IPR000595	Cyclic nucleotide-binding domain	33	117	3.4E-8

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.