Pseudomonas protegens CHA0, PFLCHA0_c50290 (cph25)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF02743 | Cache domain | IPR033479 | Double Cache domain 1 | 46 | 280 | 6.7E-18 |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 265 | 496 | 3.9E-67 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 340 | 495 | 1.33E-47 |
| CDD | cd12914 | PDC1_DGC_like | - | - | 70 | 194 | 4.6503E-20 |
| CDD | cd12915 | PDC2_DGC_like | - | - | 196 | 292 | 3.60611E-23 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 42 | 192 | 6.7E-29 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 331 | 496 | 4.7E-51 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 195 | 283 | 3.5E-22 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 330 | 498 | 7.6E-51 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 338 | 495 | 1.30488E-61 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 321 | 497 | 3.0E-56 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 335 | 493 | 4.5E-47 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 324 | 497 | 9.6E-67 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.