Pseudomonas protegens CHA0, PFLCHA0_c56280 (pqqE2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00729
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0018189 pyrroloquinoline quinone biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDF00280
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00729
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051539 4 iron, 4 sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDF00280
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SFLD SFLDF00280 coenzyme PQQ synthesis protein E (PqqE-like) IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria 52 420 0.0
SUPERFAMILY SSF102114 Radical SAM enzymes - - 57 365 4.71E-76
PANTHER PTHR11228 RADICAL SAM DOMAIN PROTEIN - - 55 383 2.4E-82
Hamap MF_00660 PqqA peptide cyclase [pqqE]. IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria 49 423 192.034256
SFLD SFLDS00029 Radical SAM IPR007197 Radical SAM 52 420 0.0
SMART SM00729 MiaB IPR006638 Elp3/MiaA/NifB-like, radical SAM core domain 58 261 4.5E-4
CDD cd01335 Radical_SAM - - 63 238 3.35202E-28
NCBIfam TIGR02109 JCVI: pyrroloquinoline quinone biosynthesis protein PqqE IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria 53 413 0.0
Pfam PF04055 Radical SAM superfamily IPR007197 Radical SAM 64 219 3.1E-23
MobiDBLite mobidb-lite consensus disorder prediction - - 1 44 -
Pfam PF13186 Iron-sulfur cluster-binding domain IPR023885 4Fe4S-binding SPASM domain 291 356 2.1E-8
NCBIfam TIGR04085 JCVI: SPASM domain IPR023885 4Fe4S-binding SPASM domain 298 383 5.9E-7
CDD cd21119 SPASM_PqqE - - 288 400 6.43564E-89
PIRSF PIRSF037420 PqqE IPR017200 Coenzyme PQQ synthesis protein E-like 43 405 0.0
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 59 337 1.3E-47
Pfam PF13394 4Fe-4S single cluster domain - - 67 132 4.1E-7
MobiDBLite mobidb-lite consensus disorder prediction - - 1 47 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.