Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Biological Process | GO:0006352 | DNA-templated transcription, initiation |
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003700 | DNA-binding transcription factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0016987 | sigma factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
|
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
CDD | cd06171 | Sigma70_r4 | - | - | 113 | 163 | 1.78975E-7 |
Gene3D | G3DSA:1.10.10.10 | - | IPR036388 | Winged helix-like DNA-binding domain superfamily | 95 | 167 | 1.8E-13 |
Gene3D | G3DSA:1.10.1740.10 | - | - | - | 1 | 94 | 4.8E-12 |
SUPERFAMILY | SSF88659 | Sigma3 and sigma4 domains of RNA polymerase sigma factors | IPR013324 | RNA polymerase sigma factor, region 3/4-like | 91 | 167 | 1.85E-15 |
PANTHER | PTHR43133 | RNA POLYMERASE ECF-TYPE SIGMA FACTO | IPR039425 | RNA polymerase sigma-70 like | 4 | 163 | 2.4E-30 |
NCBIfam | TIGR02937 | JCVI: sigma-70 family RNA polymerase sigma factor | IPR014284 | RNA polymerase sigma-70 like domain | 14 | 164 | 1.2E-21 |
Pfam | PF04542 | Sigma-70 region 2 | IPR007627 | RNA polymerase sigma-70 region 2 | 15 | 79 | 1.6E-12 |
Pfam | PF08281 | Sigma-70, region 4 | IPR013249 | RNA polymerase sigma factor 70, region 4 type 2 | 111 | 163 | 2.4E-15 |
FunFam | G3DSA:1.10.10.10:FF:000427 | RNA polymerase sigma factor | - | - | 78 | 167 | 2.6E-36 |
SUPERFAMILY | SSF88946 | Sigma2 domain of RNA polymerase sigma factors | IPR013325 | RNA polymerase sigma factor, region 2 | 5 | 77 | 3.57E-13 |