Pseudomonas protegens CHA0, PFLCHA0_c60410

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pprc03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction - - 27 45 -
NCBIfam TIGR03350 JCVI: type VI secretion system protein TssL C-terminal extension domain IPR017733 Type VI secretion system, OmpA-like domain, proteobacteria 299 435 2.3E-50
Pfam PF00691 OmpA family IPR006665 OmpA-like domain 331 429 2.2E-15
MobiDBLite mobidb-lite consensus disorder prediction - - 403 423 -
Gene3D G3DSA:1.25.40.590 Type IV / VI secretion system, DotU IPR038522 Type IV / VI secretion system, DotU superfamily 56 213 1.3E-48
CDD cd07185 OmpA_C-like IPR006665 OmpA-like domain 331 435 4.49211E-34
SUPERFAMILY SSF103088 OmpA-like IPR036737 OmpA-like domain superfamily 320 435 2.88E-28
MobiDBLite mobidb-lite consensus disorder prediction - - 1 50 -
MobiDBLite mobidb-lite consensus disorder prediction - - 1 18 -
NCBIfam NF038228 NCBIFAM: type IVB secretion system protein IcmH/DotU - - 56 273 3.0E-46
NCBIfam TIGR03349 JCVI: DotU/TssL family secretion system protein IPR017732 Type IV / VI secretion system, DotU 58 267 2.1E-73
Pfam PF09850 Type VI secretion system protein DotU IPR017732 Type IV / VI secretion system, DotU 59 261 1.2E-68
PANTHER PTHR38033 MEMBRANE PROTEIN-RELATED - - 54 277 3.9E-47
Gene3D G3DSA:3.30.1330.60 - IPR036737 OmpA-like domain superfamily 289 440 3.3E-41

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.