Pseudomonas protegens CHA0, PFLCHA0_c60490

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF04965 Baseplate wedge protein gp25 IPR007048 IraD/Gp25-like 51 153 3.9E-22
TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein IPR017737 Type VI secretion system protein TssE1-like 23 173 3.1E-31
SUPERFAMILY SSF160719 gpW/gp25-like - - 50 164 2.48E-10
PANTHER PTHR38595 CYTOPLASMIC PROTEIN-RELATED - - 18 173 1.0E-48
PANTHER PTHR38595:SF1 CYTOPLASMIC PROTEIN-RELATED - - 18 173 1.0E-48

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.