Pseudomonas protegens CHA0, PFLCHA0_c60530

Cytoplasmic Membrane
Outer Membrane
View in GBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP


Database Xref Pathway Version Evidence PMID
KEGG pprc03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset 11 523 0.0
MobiDBLite mobidb-lite consensus disorder prediction 465 483 -
MobiDBLite mobidb-lite consensus disorder prediction 465 486 -
Gene3D G3DSA: 14 332 1.5E-130
SUPERFAMILY SSF69255 364 452 3.66E-36
SUPERFAMILY SSF69279 189 363 3.91E-36
SUPERFAMILY SSF69279 12 184 3.49E-60
Gene3D G3DSA: IPR037026 Vgr protein, OB-fold domain superfamily 355 457 3.3E-49
Gene3D G3DSA:3.30.1920.30 224 286 1.5E-130
Pfam PF05954 Phage late control gene D protein (GPD) 30 329 5.8E-103
Gene3D G3DSA: 98 189 1.5E-130
SUPERFAMILY SSF69349 442 617 2.82E-39
TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein IPR006533 Type VI secretion system, RhsGE-associated Vgr protein 24 506 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.