Pseudomonas poae RE_1-1-14, H045_03370

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.3260.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003910 DNA ligase (ATP) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04679
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04679
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04679
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppz03030 DNA replication 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppz03420 Nucleotide excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppz03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppz03410 Base excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 418 543 1.42E-28
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 208 413 1.58E-53
Pfam PF04679 ATP dependent DNA ligase C terminal region IPR012309 DNA ligase, ATP-dependent, C-terminal 434 528 1.1E-9
Gene3D G3DSA:1.10.3260.10 - IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily 2 184 8.3E-13
Pfam PF01068 ATP dependent DNA ligase domain IPR012310 DNA ligase, ATP-dependent, central 218 413 1.1E-25
NCBIfam TIGR04120 JCVI: cisplatin damage response ATP-dependent DNA ligase IPR026333 ATP-dependent DNA ligase, PP_1105 family 2 543 0.0
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 417 544 9.0E-29
PANTHER PTHR45674 DNA LIGASE 1/3 FAMILY MEMBER - - 2 543 1.6E-56
CDD cd07972 OBF_DNA_ligase_Arch_LigB - - 418 540 3.82761E-59
Pfam PF04675 DNA ligase N terminus IPR012308 DNA ligase, ATP-dependent, N-terminal 2 161 1.4E-17
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 210 413 1.6E-42
CDD cd07897 Adenylation_DNA_ligase_Bac1 - - 207 417 1.9534E-112
SUPERFAMILY SSF117018 ATP-dependent DNA ligase DNA-binding domain IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily 3 180 8.24E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.