Pseudomonas poae RE_1-1-14, H045_10870

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00630
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00630
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009380 excinuclease repair complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00630
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006289 nucleotide-excision repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00630
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00005
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppz03420 Nucleotide excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00005 ABC transporter IPR003439 ABC transporter-like, ATP-binding domain 491 739 2.2E-7
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 487 793 2.81E-46
CDD cd03270 ABC_UvrA_I - - 2 446 4.80543E-79
PANTHER PTHR43152 UVRABC SYSTEM PROTEIN A - - 121 817 0.0
Pfam PF17755 UvrA DNA-binding domain IPR041552 UvrA DNA-binding domain 149 262 7.6E-13
Gene3D G3DSA:1.20.1580.10 ABC transporter ATPase like domain - - 572 709 0.0
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 478 815 0.0
NCBIfam TIGR00630 JCVI: excinuclease ABC subunit UvrA IPR004602 UvrABC system subunit A 120 804 0.0
Gene3D G3DSA:1.20.1580.10 ABC transporter ATPase like domain - - 86 358 0.0
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 5 440 1.26E-30
Gene3D G3DSA:1.10.8.280 - - - 144 268 0.0
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 2 463 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.