Pseudomonas poae RE_1-1-14, H045_18540

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47384
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppz02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:6.10.340.10 - - - 167 255 5.1E-9
CDD cd18773 PDC1_HK_sensor - - 40 167 4.33292E-6
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 365 475 1.7E-14
SMART SM00388 HisKA_10 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 255 320 1.3E-14
Coils Coil Coil - - 301 321 -
Pfam PF00512 His Kinase A (phospho-acceptor) domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 260 319 2.2E-13
Pfam PF00672 HAMP domain IPR003660 HAMP domain 201 251 3.8E-7
PANTHER PTHR45436 SENSOR HISTIDINE KINASE YKOH - - 2 473 4.8E-66
SUPERFAMILY SSF47384 Homodimeric domain of signal transducing histidine kinase IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily 245 319 8.24E-14
CDD cd06225 HAMP - - 210 250 1.59399E-4
SUPERFAMILY SSF103190 Sensory domain-like IPR029151 Periplasmic sensor-like domain superfamily 64 178 1.65E-13
Gene3D G3DSA:3.30.450.20 PAS domain - - 88 166 9.9E-6
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 310 471 6.81E-25
SMART SM00304 HAMP_11 IPR003660 HAMP domain 204 255 7.1E-5
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 323 475 8.1E-23
CDD cd00082 HisKA IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 260 316 2.23511E-12
Gene3D G3DSA:1.10.287.130 - - - 256 320 1.7E-14
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 369 471 1.0E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.