Pseudomonas poae RE_1-1-14, H045_20320

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR47964
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00643
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003678 DNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00643
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppz03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 480 586 7.5E-17
FunFam G3DSA:3.40.50.300:FF:000391 ATP-dependent DNA helicase RecG - - 456 628 4.1E-93
NCBIfam TIGR00643 JCVI: ATP-dependent DNA helicase RecG IPR004609 ATP-dependent DNA helicase RecG 27 663 0.0
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 293 430 1.2E-18
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 7 172 9.25E-36
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 45 138 6.5E-11
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 317 598 3.13E-56
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 503 587 2.2E-21
PANTHER PTHR47964 ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC IPR047112 ATP-dependent DNA helicase RecG/Transcription-repair-coupling factor 7 672 0.0
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 456 628 1.2E-54
Pfam PF17191 RecG wedge domain IPR033454 RecG, wedge domain 12 171 2.0E-18
CDD cd18811 SF2_C_RecG - - 456 613 7.82059E-75
Pfam PF19833 ATP-dependent DNA helicase RecG, domain 3, C-terminal IPR045562 ATP-dependent DNA helicase RecG, domain 3, C-terminal 614 675 9.1E-15
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 265 458 1.4E-27
CDD cd04488 RecG_wedge_OBF - - 61 134 4.05568E-21
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 209 448 2.1E-79
CDD cd17992 DEXHc_RecG - - 224 451 1.69393E-110

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.