Pseudomonas poae RE_1-1-14, H045_20370

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppz02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppz03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR03348 JCVI: type VI secretion system membrane subunit TssM IPR017731 Type VI secretion system protein TssM1-like 15 1164 0.0
Pfam PF14331 IcmF-related N-terminal domain IPR025743 IcmF-related, N-terminal domain 190 448 2.6E-97
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 120 289 1.21E-9
Pfam PF06744 Type VI secretion protein IcmF C2-like domain IPR010623 Type VI secretion system IcmF, C-terminal 1041 1147 2.3E-28
Pfam PF06761 Intracellular multiplication and human macrophage-killing IPR009612 IcmF-related 502 792 1.4E-82
PANTHER PTHR36153 INNER MEMBRANE PROTEIN-RELATED - - 4 1166 0.0
Coils Coil Coil - - 301 321 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.