Pseudomonas denitrificans ATCC 13867, H681_00470

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00725
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0070403 NAD+ binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02737
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016491 oxidoreductase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00725
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006631 fatty acid metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00725
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pdr01200 Carbon metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pdr01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pdr01212 Fatty acid metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pdr01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pdr00071 Fatty acid degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pdr00650 Butanoate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pdr00362 Benzoate degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains IPR036291 NAD(P)-binding domain superfamily 294 474 9.53E-55
PANTHER PTHR23309 3-HYDROXYACYL-COA DEHYROGENASE - - 11 692 0.0
Gene3D G3DSA:1.10.1040.50 - - - 480 696 1.8E-74
Gene3D G3DSA:3.90.226.10 - - - 4 282 3.9E-84
SUPERFAMILY SSF52096 ClpP/crotonase IPR029045 ClpP/crotonase-like domain superfamily 3 286 2.82E-63
Gene3D G3DSA:3.40.50.720 - - - 284 473 1.4E-67
CDD cd06558 crotonase-like - - 5 189 7.01767E-56
SUPERFAMILY SSF48179 6-phosphogluconate dehydrogenase C-terminal domain-like IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily 477 620 8.16E-29
Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding 298 474 6.8E-60
Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal 478 571 1.7E-22
FunFam G3DSA:1.10.1040.50:FF:000006 Peroxisomal bifunctional enzyme - - 480 697 1.6E-68
FunFam G3DSA:3.40.50.720:FF:000009 Fatty oxidation complex, alpha subunit - - 295 480 5.3E-68
Pfam PF00378 Enoyl-CoA hydratase/isomerase IPR001753 Enoyl-CoA hydratase/isomerase 10 190 1.3E-34
Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal 607 692 9.9E-8
SUPERFAMILY SSF48179 6-phosphogluconate dehydrogenase C-terminal domain-like IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily 602 694 2.04E-23

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.