Pseudomonas denitrificans ATCC 13867, H681_15645

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0000027 ribosomal large subunit assembly
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00964
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003724 RNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00964
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0070417 cellular response to cold
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00964
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pdr03018 RNA degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 232 340 1.2E-29
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 25 223 8.2E-59
Pfam PF03880 DbpA RNA binding domain IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain 489 557 2.8E-18
Gene3D G3DSA:3.30.70.330 - IPR012677 Nucleotide-binding alpha-beta plait domain superfamily 487 560 9.9E-17
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 207 5.1E-74
FunFam G3DSA:3.40.50.300:FF:000108 ATP-dependent RNA helicase RhlE - - 6 211 1.3E-82
MobiDBLite mobidb-lite consensus disorder prediction - - 439 488 -
MobiDBLite mobidb-lite consensus disorder prediction - - 446 482 -
PANTHER PTHR47963 DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL - - 7 535 1.1E-125
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 31 194 9.5E-46
Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. IPR028618 ATP-dependent RNA helicase DeaD 1 559 41.470108
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 208 373 6.9E-47
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 259 340 3.3E-32
CDD cd00268 DEADc - - 17 209 3.48394E-85
CDD cd18787 SF2_C_DEAD - - 220 349 3.80299E-49
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 75 361 5.94E-69

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.