Pseudomonas denitrificans ATCC 13867, H681_15700

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01047
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01047
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 7 147 9.24E-35
SMART SM00347 marrlong4 IPR000835 MarR-type HTH domain 34 132 2.4E-21
PANTHER PTHR33164 TRANSCRIPTIONAL REGULATOR, MARR FAMILY IPR039422 Transcription regulators MarR/SlyA-like 12 144 2.0E-21
Pfam PF01047 MarR family IPR000835 MarR-type HTH domain 41 99 3.6E-14
Coils Coil Coil - - 125 145 -
PRINTS PR00598 Bacterial regulatory protein MarR family signature IPR000835 MarR-type HTH domain 75 90 5.1E-5
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 6 148 4.6E-38
FunFam G3DSA:1.10.10.10:FF:000163 MarR family transcriptional regulator - - 7 148 1.7E-55
PRINTS PR00598 Bacterial regulatory protein MarR family signature IPR000835 MarR-type HTH domain 94 110 5.1E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.