Pseudomonas denitrificans ATCC 13867, H681_15710

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003746 translation elongation factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00141
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0043043 peptide biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00841
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006414 translational elongation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00141
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00141
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:2.40.50.140:FF:000009 Elongation factor P - - 64 128 1.6E-18
SMART SM01185 EFP_2 IPR001059 Translation elongation factor P/YeiP, central 67 122 3.4E-14
Pfam PF09285 Elongation factor P, C-terminal IPR015365 Elongation factor P, C-terminal 130 185 2.4E-21
SMART SM00841 Elong_fact_P_C_2 IPR015365 Elongation factor P, C-terminal 130 185 3.0E-25
NCBIfam TIGR00038 JCVI: elongation factor P IPR011768 Translation elongation factor P 3 186 1.4E-60
SUPERFAMILY SSF50104 Translation proteins SH3-like domain IPR008991 Translation protein SH3-like domain superfamily 1 62 3.91E-17
Hamap MF_00141 Elongation factor P [efp]. IPR011768 Translation elongation factor P 1 186 48.47364
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 129 188 3.8E-24
PANTHER PTHR30053 ELONGATION FACTOR P IPR020599 Translation elongation factor P/YeiP 3 185 1.5E-43
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 130 186 2.57E-15
CDD cd05794 S1_EF-P_repeat_2 IPR015365 Elongation factor P, C-terminal 130 185 7.07238E-19
Pfam PF08207 Elongation factor P (EF-P) KOW-like domain IPR013185 Translation elongation factor, KOW-like 3 60 5.7E-22
CDD cd04470 S1_EF-P_repeat_1 IPR001059 Translation elongation factor P/YeiP, central 66 127 2.68859E-17
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 65 128 3.3E-12
FunFam G3DSA:2.30.30.30:FF:000003 Elongation factor P - - 1 63 4.6E-23
FunFam G3DSA:2.40.50.140:FF:000004 Elongation factor P - - 129 187 3.2E-24
Pfam PF01132 Elongation factor P (EF-P) OB domain IPR001059 Translation elongation factor P/YeiP, central 68 122 6.8E-12
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 64 128 8.4E-21
Gene3D G3DSA:2.30.30.30 - IPR014722 Large ribosomal subunit protein uL2, domain 2 1 63 3.5E-25
PIRSF PIRSF005901 EF-P IPR020599 Translation elongation factor P/YeiP 1 187 6.0E-57

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.