Pseudomonas denitrificans ATCC 13867, H681_15760
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0008664 | 2'-5'-RNA ligase activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02258
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Molecular Function | GO:0004113 | 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02258
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF55144 | LigT-like | IPR009097 | Cyclic phosphodiesterase | 7 | 169 | 1.74E-37 |
| Hamap | MF_01940 | RNA 2',3'-cyclic phosphodiesterase [thpR]. | IPR004175 | RNA 2',3'-cyclic phosphodiesterase | 6 | 169 | 19.547882 |
| Pfam | PF13563 | 2'-5' RNA ligase superfamily | - | - | 15 | 132 | 7.0E-11 |
| PANTHER | PTHR35561 | RNA 2',3'-CYCLIC PHOSPHODIESTERASE | IPR004175 | RNA 2',3'-cyclic phosphodiesterase | 5 | 170 | 3.4E-33 |
| NCBIfam | TIGR02258 | JCVI: RNA 2',3'-cyclic phosphodiesterase | IPR004175 | RNA 2',3'-cyclic phosphodiesterase | 7 | 169 | 1.0E-29 |
| Gene3D | G3DSA:3.90.1140.10 | Cyclic phosphodiesterase | - | - | 4 | 170 | 7.7E-43 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.