Pseudomonas denitrificans ATCC 13867, H681_22510

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01590
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00065 gaf_1 IPR003018 GAF domain 193 344 5.8E-8
Pfam PF13426 PAS domain IPR000014 PAS domain 359 460 6.8E-13
SUPERFAMILY SSF55781 GAF domain-like - - 196 336 7.85E-20
SMART SM00052 duf2_2 IPR001633 EAL domain 640 886 3.3E-123
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 472 625 1.8E-42
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 477 631 1.02E-42
Pfam PF00563 EAL domain IPR001633 EAL domain 647 881 5.1E-78
CDD cd01948 EAL IPR001633 EAL domain 646 886 1.48244E-101
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 168 344 9.3E-17
SMART SM00091 pas_2 IPR000014 PAS domain 14 87 38.0
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 645 894 1.31E-91
CDD cd00130 PAS IPR000014 PAS domain 356 458 2.09666E-8
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 140 892 0.0
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 472 642 5.5E-52
CDD cd01949 GGDEF IPR000160 GGDEF domain 473 628 2.84582E-54
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 468 629 2.9E-36
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 347 467 1.2E-14
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 641 895 1.9E-102
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 353 459 8.22E-20
SMART SM00267 duf1_3 IPR000160 GGDEF domain 461 630 4.1E-56
SMART SM00091 pas_2 IPR000014 PAS domain 347 414 4.1E-4
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 643 895 1.9E-102
Pfam PF01590 GAF domain IPR003018 GAF domain 194 333 5.4E-11
SMART SM00086 pac_2 IPR001610 PAC motif 419 461 6.5E-6
Gene3D G3DSA:3.30.450.20 PAS domain - - 346 471 5.5E-26

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.