Pseudomonas denitrificans ATCC 13867, H681_22795

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003724 RNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00968
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0042255 ribosome assembly
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00968
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pdr03018 RNA degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 24 103 5.04E-5
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 263 344 1.9E-32
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 25 200 5.7E-45
FunFam G3DSA:3.40.50.300:FF:000468 ATP-dependent RNA helicase RhlE - - 218 401 7.1E-93
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 80 365 4.12E-72
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 215 1.9E-74
CDD cd00268 DEADc - - 12 213 6.24204E-97
MobiDBLite mobidb-lite consensus disorder prediction - - 637 672 -
Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. IPR028622 ATP-dependent RNA helicase RhlE 1 583 49.740696
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 20 227 2.0E-60
MobiDBLite mobidb-lite consensus disorder prediction - - 390 672 -
FunFam G3DSA:3.40.50.300:FF:000108 ATP-dependent RNA helicase RhlE - - 1 215 4.4E-90
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 218 437 8.7E-51
CDD cd18787 SF2_C_DEAD - - 224 353 1.36253E-59
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 245 344 4.5E-26
PANTHER PTHR47959 ATP-DEPENDENT RNA HELICASE RHLE-RELATED - - 2 583 0.0
MobiDBLite mobidb-lite consensus disorder prediction - - 397 424 -
MobiDBLite mobidb-lite consensus disorder prediction - - 466 490 -
MobiDBLite mobidb-lite consensus disorder prediction - - 533 574 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.