Pseudomonas denitrificans ATCC 13867, H681_24810

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 696 943 8.5E-94
Pfam PF08447 PAS fold IPR013655 PAS fold-3 298 380 1.2E-20
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 519 679 8.2E-34
SMART SM00086 pac_2 IPR001610 PAC motif 467 509 3.0E-5
Pfam PF13426 PAS domain IPR000014 PAS domain 406 507 2.2E-15
Pfam PF00563 EAL domain IPR001633 EAL domain 698 931 1.1E-76
SMART SM00086 pac_2 IPR001610 PAC motif 344 387 1.2E-5
Coils Coil Coil - - 685 705 -
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 692 946 3.0E-106
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 520 676 8.4E-43
CDD cd01948 EAL IPR001633 EAL domain 697 936 5.40388E-109
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 374 944 0.0
CDD cd01949 GGDEF IPR000160 GGDEF domain 521 679 1.64557E-52
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 523 689 6.0E-51
CDD cd00130 PAS IPR000014 PAS domain 404 506 1.78982E-10
Gene3D G3DSA:3.30.450.20 PAS domain - - 394 522 7.7E-33
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 391 516 6.5E-20
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 297 393 5.4E-9
SMART SM00091 pas_2 IPR000014 PAS domain 270 337 34.0
Gene3D G3DSA:3.30.450.20 PAS domain - - 263 383 1.2E-31
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 692 946 2.1E-94
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 400 507 2.58E-24
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 525 683 1.65E-44
SMART SM00091 pas_2 IPR000014 PAS domain 395 461 2.6E-8
SMART SM00267 duf1_3 IPR000160 GGDEF domain 509 681 4.5E-55
Coils Coil Coil - - 216 250 -
CDD cd00130 PAS IPR000014 PAS domain 299 384 4.48395E-7
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 279 388 4.03E-16
SMART SM00052 duf2_2 IPR001633 EAL domain 691 936 3.4E-124

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.