Pseudomonas aeruginosa LESB58, PALES_01561 (pcaR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0046278 3,4-dihydroxybenzoate metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02431
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09339
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0045893 positive regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02431
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09339
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Carbon compound catabolism Other LESB58 genes in this class
Transcriptional regulators Other LESB58 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Aromatic compound catabolism ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01614 Bacterial transcriptional regulator IPR014757 Transcription regulator IclR, C-terminal 151 275 4.5E-35
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 100 279 9.7E-54
Pfam PF09339 IclR helix-turn-helix domain IPR005471 Transcription regulator IclR, N-terminal 35 86 2.8E-14
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 20 99 5.6E-22
SUPERFAMILY SSF55781 GAF domain-like - - 98 277 4.56E-49
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 34 105 4.76E-11
FunFam G3DSA:3.30.450.40:FF:000039 IclR family transcriptional regulator - - 102 278 2.1E-92
FunFam G3DSA:1.10.10.10:FF:000317 IclR family transcriptional regulator - - 20 99 2.4E-51
SMART SM00346 iclrneu IPR005471 Transcription regulator IclR, N-terminal 33 121 3.0E-33
NCBIfam TIGR02431 JCVI: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR 30 276 5.5E-101
PANTHER PTHR30136 HELIX-TURN-HELIX TRANSCRIPTIONAL REGULATOR, ICLR FAMILY - - 28 277 2.4E-73

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.