Pseudomonas aeruginosa LESB58, PALES_01771 (aer2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009454 aerotaxis
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA0176
 ECO:0000249
sequence similarity evidence used in automatic assertion		 14987771
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016021 integral component of membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF18947
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Chemotaxis Other LESB58 genes in this class
Adaptation, Protection Other LESB58 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Chemotactic transducer (MCP) ECO:0000037
not_recorded
PseudoCAP Chemotaxis ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF13188 PAS domain IPR000014 PAS domain 173 221 2.0E-5
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 513 542 4.1E-56
Coils Coil Coil - - 590 617 -
Coils Coil Coil - - 409 429 -
Gene3D G3DSA:3.30.450.20 PAS domain - - 170 289 9.5E-43
PANTHER PTHR43531:SF6 METHYL-ACCEPTING CHEMOTAXIS PROTEIN I-RELATED - - 207 679 0.0
CDD cd11386 MCP_signal - - 413 604 3.95484E-57
Gene3D G3DSA:1.10.287.950 - - - 336 635 1.1E-79
PANTHER PTHR43531:SF6 METHYL-ACCEPTING CHEMOTAXIS PROTEIN I-RELATED - - 12 188 0.0
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 353 634 6.28E-74
Gene3D G3DSA:1.20.120.1530 - - - 1 156 3.0E-41
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 167 275 8.38E-6
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 484 511 4.1E-56
Coils Coil Coil - - 41 68 -
MobiDBLite mobidb-lite consensus disorder prediction - - 405 425 -
Pfam PF18947 HAMP domain IPR003660 HAMP domain 318 379 7.8E-8
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 386 633 1.2E-90
PANTHER PTHR43531 PROTEIN ICFG - - 207 679 0.0
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 446 601 3.3E-54
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 407 436 4.1E-56
PANTHER PTHR43531 PROTEIN ICFG - - 12 188 0.0
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 561 590 4.1E-56
Pfam PF18575 HAMP N-terminal domain 3 IPR041395 HAMP N-terminal domain 3 114 156 4.5E-18
CDD cd17528 HAMP_III - - 112 155 4.03707E-16
CDD cd17529 HAMP_I - - 11 55 2.1366E-10
MobiDBLite mobidb-lite consensus disorder prediction - - 644 679 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.