Pseudomonas aeruginosa LESB58, PALES_05001 (bioD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43210
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009102 biotin biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43210
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000287 magnesium ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43210
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004141 dethiobiotin synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43210
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Biosynthesis of cofactors, prosthetic groups and carriers Other LESB58 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Biotin metabolism ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. IPR004472 Dethiobiotin synthase BioD 1 218 28.949629
NCBIfam TIGR00347 JCVI: dethiobiotin synthase IPR004472 Dethiobiotin synthase BioD 5 176 9.3E-44
PIRSF PIRSF006755 DTB_synth IPR004472 Dethiobiotin synthase BioD 1 226 3.8E-76
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 3 222 5.3E-68
Pfam PF13500 AAA domain - - 4 212 8.4E-36
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 214 1.03E-59
CDD cd03109 DTBS - - 2 194 5.37463E-47
PANTHER PTHR43210 DETHIOBIOTIN SYNTHETASE IPR004472 Dethiobiotin synthase BioD 1 217 1.5E-59
FunFam G3DSA:3.40.50.300:FF:000292 ATP-dependent dethiobiotin synthetase BioD - - 2 224 6.8E-80

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.