Pseudomonas aeruginosa LESB58, PALES_49941 (radA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003684 damaged DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01498
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01498
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01498
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other LESB58 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR32472 DNA REPAIR PROTEIN RADA - - 3 452 7.0E-114
PRINTS PR01874 DNA repair protein radA signature - - 319 342 2.8E-94
FunFam G3DSA:3.30.230.10:FF:000011 DNA repair protein RadA - - 296 453 5.9E-91
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 88 241 2.5E-10
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 66 286 2.01E-50
PRINTS PR01874 DNA repair protein radA signature - - 210 238 2.8E-94
PRINTS PR01874 DNA repair protein radA signature - - 80 108 2.8E-94
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 57 271 4.5E-43
Pfam PF13541 Subunit ChlI of Mg-chelatase - - 361 427 8.3E-7
Gene3D G3DSA:3.30.230.10 - IPR014721 Small ribosomal subunit protein uS5 domain 2-type fold, subgroup 281 453 3.9E-21
PRINTS PR01874 DNA repair protein radA signature - - 171 195 2.8E-94
Hamap MF_01498 DNA repair protein RadA [radA]. IPR004504 DNA repair protein RadA 21 452 43.918098
PRINTS PR01874 DNA repair protein radA signature - - 245 271 2.8E-94
CDD cd01121 RadA_SMS_N - - 8 274 0.0
FunFam G3DSA:3.40.50.300:FF:000050 DNA repair protein RadA - - 60 272 7.4E-99
PRINTS PR01874 DNA repair protein radA signature - - 10 34 2.8E-94
PRINTS PR01874 DNA repair protein radA signature - - 121 138 2.8E-94
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 252 452 2.73E-40
NCBIfam TIGR00416 JCVI: DNA repair protein RadA IPR004504 DNA repair protein RadA 1 448 0.0
Pfam PF18073 Rubredoxin metal binding domain IPR041166 LapB, rubredoxin metal binding domain 8 35 1.4E-10
Pfam PF13481 AAA domain - - 74 219 1.6E-13

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.