Pseudomonas aeruginosa PACS2, A0K_RS21950

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.10.60 - - - 202 245 6.8E-8
CDD cd06986 cupin_MmsR-like_N - - 41 127 2.05729E-24
PANTHER PTHR46796 HTH-TYPE TRANSCRIPTIONAL ACTIVATOR RHAS-RELATED - - 50 301 1.1E-26
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 203 246 1.16E-6
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 251 301 1.93E-12
SUPERFAMILY SSF51215 Regulatory protein AraC IPR037923 Transcription regulator HTH-like 36 187 3.79E-32
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 220 299 9.0E-16
Gene3D G3DSA:2.60.120.280 Regulatory protein AraC - - 47 187 5.6E-10
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 281 297 2.7E-5
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 47 184 1.4E-27
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 266 281 2.7E-5
Gene3D G3DSA:1.10.10.60 - - - 246 302 2.8E-15
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 214 297 8.7E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.