Pseudomonas aeruginosa PACS2, A0K_RS29775

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF103365
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008452 RNA ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF103365
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Antibiotic resistance and susceptibility Other PACS2 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01139 tRNA-splicing ligase RtcB IPR001233 RNA-splicing ligase, RtcB 125 372 6.1E-55
Pfam PF01139 tRNA-splicing ligase RtcB IPR001233 RNA-splicing ligase, RtcB 29 97 6.5E-9
Gene3D G3DSA:3.90.1860.10 - IPR036025 tRNA-splicing ligase RtcB-like superfamily 12 372 1.9E-88
PANTHER PTHR11118 UNCHARACTERIZED IPR001233 RNA-splicing ligase, RtcB 21 98 2.2E-75
NCBIfam TIGR03073 JCVI: RNA ligase RtcB family protein, release factor H-associated IPR017510 Release factor H-coupled RctB family protein 12 367 0.0
SUPERFAMILY SSF103365 Hypothetical protein PH1602 IPR036025 tRNA-splicing ligase RtcB-like superfamily 8 372 6.8E-103

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.