Pseudomonas aeruginosa PAO1, PA0933 (ygcA)

Gene Feature Overview

Strain	Pseudomonas aeruginosa PAO1 (Reference) GCF_000006765.1|latest
Locus Tag	PA0933
Name	ygcA
Replicon	chromosome
Genomic location	1021616 - 1022968 (+ strand)
Transposon Mutants	4 transposon mutants in PAO1
Transposon Mutants in orthologs	3 transposon mutants in orthologs

Cross-References

RefSeq	NP_249624.1
GI	15596130
Affymetrix	PA0933_ygcA_at
Entrez	881477
GenBank	AAG04322.1
INSDC	AAG04322.1
NCBI Locus Tag	PA0933
protein_id(GenBank)	gb|AAG04322.1|AE004527_9|gnl|PseudoCAP|PA0933
TIGR	NTL03PA00934
UniParc	UPI0000135322
UniProtKB Acc	Q9I525
UniProtKB ID	RLMD_PSEAE
UniRef100	UniRef100_Q02I93
UniRef50	UniRef50_Q4K898
UniRef90	UniRef90_Q02I93

Product

Feature Type	CDS
Coding Frame	1
Product Name	probable RNA methyltransferase Product Name Confidence: Class 3
Synonyms
Evidence for Translation	Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7)	3.22
Kyte-Doolittle Hydrophobicity Value	-0.150
Molecular Weight (kDa)	49.1
Isoelectric Point (pI)	7.84

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold Protein Structure Database

Available for P. aeruginosa PAO1.

View predicted 3D structure in AlphaFold DB

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 551 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000899 (553 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PA0933 Search term: ygcA Search term: probable RNA methyltransferase

Human Homologs

References