Pseudomonas aeruginosa PAO1, PA0933 (ygcA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA0933
Name
ygcA
Replicon chromosome
Genomic location 1021616 - 1022968 (+ strand)
Transposon Mutants 4 transposon mutants in PAO1
Transposon Mutants in orthologs 3 transposon mutants in orthologs

Cross-References

RefSeq NP_249624.1
GI 15596130
Affymetrix PA0933_ygcA_at
Entrez 881477
GenBank AAG04322.1
INSDC AAG04322.1
NCBI Locus Tag PA0933
protein_id(GenBank) gb|AAG04322.1|AE004527_9|gnl|PseudoCAP|PA0933
TIGR NTL03PA00934
UniParc UPI0000135322
UniProtKB Acc Q9I525
UniProtKB ID RLMD_PSEAE
UniRef100 UniRef100_Q02I93
UniRef50 UniRef50_Q4K898
UniRef90 UniRef90_Q02I93

Product

Feature Type CDS
Coding Frame 1
Product Name
probable RNA methyltransferase
Product Name Confidence: Class 3
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) 3.22
Kyte-Doolittle Hydrophobicity Value -0.150
Molecular Weight (kDa) 49.1
Isoelectric Point (pI) 7.84

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 551 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000899 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA0933
Search term: ygcA

Human Homologs

References

No references are associated with this feature.