Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA1581
|
Name |
sdhC
Synonym: cybA |
Replicon | chromosome |
Genomic location | 1720744 - 1721130 (+ strand) |
RefSeq | NP_250272.1 |
GI | 15596778 |
Affymetrix | PA1581_sdhC_at |
DNASU | PaCD00006723 |
Entrez | 881880 |
GenBank | AAG04970.1 |
INSDC | AAG04970.1 |
NCBI Locus Tag | PA1581 |
protein_id(GenBank) | gb|AAG04970.1|AE004586_8|gnl|PseudoCAP|PA1581 |
TIGR | NTL03PA01582 |
UniParc | UPI00000C53F0 |
UniProtKB Acc | Q9I3D7 |
UniProtKB ID | Q9I3D7_PSEAE |
UniRef100 | UniRef100_W0Z2S2 |
UniRef50 | UniRef50_Q21IV9 |
UniRef90 | UniRef90_A6V7L2 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
succinate dehydrogenase (C subunit)
|
Synonyms |
succinate dehydrogenase (cytochrome b-556 subunit) |
Evidence for Translation |
Detected using LC-MS/MS (13.77 kDa, PMID:21751344)
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | 6.67 |
Kyte-Doolittle Hydrophobicity Value | 0.841 |
Molecular Weight (kDa) | 13.7 |
Isoelectric Point (pI) | 10.42 |
Individual Mappings | |
Additional evidence for subcellular localization |
Identified by Diamond using e-value cutoff of 0.0001 and returning alignments that span 100% of the query sequence and that have more than 95% identity.
Drug Name | Source Accession | Source DB | Version | Target Accession | Target Description | Percent Identity | Alignment Length | E-Value |
2-[1-METHYLHEXYL]-4,6-DINITROPHENOL | DB07671 | DrugBank | 5.1.4 | P69054 | Succinate dehydrogenase cytochrome b556 subunit | 55.0 | 129 | 3.2e-30 |
Atpenin A5 | DB04631 | DrugBank | 5.1.4 | P69054 | Succinate dehydrogenase cytochrome b556 subunit | 55.0 | 129 | 3.2e-30 |
UBIQUINONE-2 | DB08690 | DrugBank | 5.1.4 | P69054 | Succinate dehydrogenase cytochrome b556 subunit | 55.0 | 129 | 3.2e-30 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 190 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG003782 (538 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA1581
Search term: sdhC
Search term: succinate dehydrogenase (C subunit)
|
Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen.
Lewenza S, Gardy JL, Brinkman FS, Hancock RE
Genome Res 2005 Feb;15(2):321-9
PubMed ID: 15687295
|
Nucleotide sequence encoding the flavoprotein and hydrophobic subunits of the succinate dehydrogenase of Escherichia coli.
Wood D, Darlison MG, Wilde RJ, Guest JR
Biochem J 1984 Sep 1;222(2):519-34
PubMed ID: 6383359
|
Transcript analysis of the citrate synthase and succinate dehydrogenase genes of Escherichia coli K12.
Wilde RJ, Guest JR
J Gen Microbiol 1986 Dec;132(12):3239-51
PubMed ID: 3309132
|
Proteomic analysis of outer membrane vesicles derived from Pseudomonas aeruginosa.
Choi DS, Kim DK, Choi SJ, Lee J, Choi JP, Rho S, Park SH, Kim YK, Hwang D, Gho YS
Proteomics 2011 Aug;11(16):3424-9
PubMed ID: 21751344
|