Pseudomonas aeruginosa PAO1, PA2505 (opdT)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
GCF_000006765.1|latest
Locus Tag
PA2505
Name
opdT
Synonym: oprD3
Synonym: opdT
Replicon chromosome
Genomic location 2822574 - 2823920 (- strand)
Transposon Mutants 2 transposon mutants in PAO1
Transposon Mutants in orthologs 7 transposon mutants in orthologs

Cross-References

RefSeq NP_251195.1
GI 15597701
Affymetrix PA2505_at
Entrez 882988
GenBank AAG05893.1
INSDC AAG05893.1
NCBI Locus Tag PA2505
protein_id(GenBank) gb|AAG05893.1|AE004677_10|gnl|PseudoCAP|PA2505
TIGR NTL03PA02505
UniParc UPI00000C570F
UniProtKB Acc Q9I0X7
UniProtKB ID Q9I0X7_PSEAE
UniRef100 UniRef100_W0YSQ6
UniRef50 UniRef50_A0A024HAV0
UniRef90 UniRef90_W0WH26

Product

Feature Type CDS
Coding Frame 1
Product Name
tyrosine porin OpdT
Product Name Confidence: Class 1
Synonyms tyrosine porin OpdT
Evidence for Translation
Detected using LC-MS/MS (49.79 kDa, PMID:21751344)
Charge (pH 7) -10.52
Kyte-Doolittle Hydrophobicity Value -0.518
Molecular Weight (kDa) 49.8
Isoelectric Point (pI) 4.69

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 2
Outer Membrane Class 3
Outer Membrane Vesicle Class 1
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 19 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000187 (1618 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA2505
Search term: opdT

Human Homologs

References

Proteomic analysis of outer membrane vesicles derived from Pseudomonas aeruginosa.
Choi DS, Kim DK, Choi SJ, Lee J, Choi JP, Rho S, Park SH, Kim YK, Hwang D, Gho YS
Proteomics 2011 Aug;11(16):3424-9
PubMed ID: 21751344