Pseudomonas aeruginosa PAO1, PA4241 (rpsM)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA4241
Name
rpsM
Replicon chromosome
Genomic location 4756492 - 4756848 (- strand)

Cross-References

RefSeq NP_252931.1
GI 15599437
Affymetrix PA4241_rpsM_at
DNASU PaCD00007839
Entrez 881818
GenBank AAG07629.1
INSDC AAG07629.1
NCBI Locus Tag PA4241
protein_id(GenBank) gb|AAG07629.1|AE004841_7|gnl|PseudoCAP|PA4241
TIGR NTL03PA04242
UniParc UPI00000C5C7F
UniProtKB Acc Q9HWF7
UniProtKB ID RS13_PSEAE
UniRef100 UniRef100_B7V665
UniRef50 UniRef50_O46912
UniRef90 UniRef90_A6UZL0

Product

Feature Type CDS
Coding Frame 1
Product Name
30S ribosomal protein S13
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) 15.40
Kyte-Doolittle Hydrophobicity Value -0.681
Molecular Weight (kDa) 13.3
Isoelectric Point (pI) 11.53

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Cytoplasmic Class 1
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
7UNU RIBOSOME 04/11/22 Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT 2.9 ELECTRON MICROSCOPY 100.0
7UNW RIBOSOME 04/11/22 Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT 2.6 ELECTRON MICROSCOPY 100.0
6SPF RIBOSOME 09/01/19 Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate Pseudomonas aeruginosa 2.89 ELECTRON MICROSCOPY 100.0
7UNV RIBOSOME 04/11/22 Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT 2.7 ELECTRON MICROSCOPY 100.0
7UNR RIBOSOME 04/11/22 Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT 2.9 ELECTRON MICROSCOPY 100.0
6SPE RIBOSOME 09/01/19 Pseudomonas aeruginosa 30s ribosome from a clinical isolate Pseudomonas aeruginosa 3.6 ELECTRON MICROSCOPY 100.0
6SPC RIBOSOME 09/01/19 Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate Pseudomonas aeruginosa 2.95 ELECTRON MICROSCOPY 99.1
6SPG RIBOSOME 09/01/19 Pseudomonas aeruginosa 70s ribosome from a clinical isolate Pseudomonas aeruginosa 3.34 ELECTRON MICROSCOPY 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 659 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001469 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA4241
Search term: rpsM

Human Homologs

References

Nucleotide sequence of the alpha ribosomal protein operon of Escherichia coli.
Bedwell D, Davis G, Gosink M, Post L, Nomura M, Kestler H, Zengel JM, Lindahl L
Nucleic Acids Res 1985 Jun 11;13(11):3891-903
PubMed ID: 2989779
Placement of dinitrophenyl-modified ribosomal proteins in totally reconstituted Escherichia coli 30 S subunits. Localization of proteins S6, S13, S16, and S18 by immune electron microscopy.
Montesano-Roditis L, McWilliams R, Glitz DG, Olah TV, Perrault AR, Cooperman BS
J Biol Chem 1993 Sep 5;268(25):18701-9
PubMed ID: 8360163
Antisuppression by a mutation in rpsM(S13) giving a shortened ribosomal protein S13.
Faxén M, Walles-Granberg A, Isaksson LA
Biochim Biophys Acta 1994 May 17;1218(1):27-34
PubMed ID: 8193163