Pseudomonas fluorescens F113, PSF113_1226 (ligC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas fluorescens F113
GCF_000237065.1|latest |
| Locus Tag |
PSF113_1226
|
| Name |
ligC
|
| Replicon | chromosome |
| Genomic location | 1439274 - 1440962 (- strand) |
Cross-References
| RefSeq | YP_005206648.1 |
| GI | 378949160 |
| EC Number | 6.5.1.1 |
| Entrez | 11829316 |
| INSDC | AEV61253.1 |
| NCBI Locus Tag | PSF113_1226 |
| UniParc | UPI00023B4BEE |
| UniProtKB Acc | G8PW69 |
| UniProtKB ID | G8PW69_PSEFL |
| UniRef100 | UniRef100_G8PW69 |
| UniRef50 | UniRef50_G8PW69 |
| UniRef90 | UniRef90_G8PW69 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
protein LigC
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 2.16 |
| Kyte-Doolittle Hydrophobicity Value | -0.222 |
| Molecular Weight (kDa) | 63165.9 |
| Isoelectric Point (pI) | 7.83 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 257 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG015267 (193 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PSF113_1226
Search term: ligC
Search term: protein LigC
|
Human Homologs
References
No references are associated with this feature.