Pseudomonas fluorescens F113, PSF113_1682 (yvcR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas fluorescens F113
GCF_000237065.1|latest
Locus Tag
PSF113_1682
Name
yvcR
Replicon chromosome
Genomic location 1958633 - 1959316 (- strand)

Cross-References

RefSeq YP_005207101.1
GI 378949613
Entrez 11829771
INSDC AEV61706.1
NCBI Locus Tag PSF113_1682
UniParc UPI0002041638
UniProtKB Acc G8Q1V8
UniProtKB ID G8Q1V8_PSEFL
UniRef100 UniRef100_A0A0D0T4S8
UniRef50 UniRef50_A0A0B7DDC9
UniRef90 UniRef90_A0A0B7DDC9

Product

Feature Type CDS
Coding Frame 1
Product Name
protein YvcR
Synonyms
Evidence for Translation
Charge (pH 7) -8.58
Kyte-Doolittle Hydrophobicity Value -0.122
Molecular Weight (kDa) 24.5
Isoelectric Point (pI) 4.88

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002712 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSF113_1682
Search term: yvcR
Search term: protein YvcR

Human Homologs

Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40]
E-value: 3.2e-14
Percent Identity: 31.6
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40]
E-value: 3.2e-14
Percent Identity: 31.6
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40]
E-value: 3.2e-14
Percent Identity: 31.6

References

No references are associated with this feature.