Pseudomonas fluorescens F113, PSF113_4812

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas fluorescens F113
GCF_000237065.1|latest
Locus Tag
PSF113_4812
Name
Replicon chromosome
Genomic location 5599839 - 5601224 (- strand)

Cross-References

RefSeq YP_005210196.1
GI 378952708
EC Number 2.6.1.-
Entrez 11832916
INSDC AEV64801.1
NCBI Locus Tag PSF113_4812
UniParc UPI00023B41BC
UniProtKB Acc G8QAW1
UniProtKB ID G8QAW1_PSEFL
UniRef100 UniRef100_G8QAW1
UniRef50 UniRef50_Q1GD43
UniRef90 UniRef90_G8QAW1

Product

Feature Type CDS
Coding Frame 1
Product Name
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase
Synonyms
Evidence for Translation
Charge (pH 7) -5.08
Kyte-Doolittle Hydrophobicity Value -0.098
Molecular Weight (kDa) 50.1
Isoelectric Point (pI) 6.46

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
5KQU TRANSFERASE 07/06/16 Directed Evolution of Transaminases By Ancestral Reconstruction. Using Old Proteins for New Chemistries Pseudomonas 2.62 X-RAY DIFFRACTION 90.2

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 636 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG016762 (44 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSF113_4812

Human Homologs

Ensembl 110, assembly GRCh38.p14
ornithine aminotransferase [Source:HGNC Symbol;Acc:HGNC:8091]
E-value: 6.9e-32
Percent Identity: 27.1

References

No references are associated with this feature.