Pseudomonas fluorescens F113, PSF113_5813 (tnpR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas fluorescens F113
GCF_000237065.1|latest
Locus Tag
PSF113_5813
Name
tnpR
Replicon chromosome
Genomic location 6705413 - 6705991 (+ strand)

Cross-References

RefSeq YP_005211182.1
GI 378953694
Entrez 11833935
INSDC AEV65787.1
NCBI Locus Tag PSF113_5813
UniParc UPI00023B3C7F
UniProtKB Acc G8Q731
UniProtKB ID G8Q731_PSEFL
UniRef100 UniRef100_G8Q731
UniRef50 UniRef50_G8Q731
UniRef90 UniRef90_G8Q731

Product

Feature Type CDS
Coding Frame 1
Product Name
protein TnpR
Synonyms
Evidence for Translation
Charge (pH 7) -6.20
Kyte-Doolittle Hydrophobicity Value -0.413
Molecular Weight (kDa) 22070.1
Isoelectric Point (pI) 5.55

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 117 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG013900 (33 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSF113_5813
Search term: tnpR
Search term: protein TnpR

Human Homologs

References

No references are associated with this feature.