Pseudomonas fluorescens F113, PSF113_5886 (gmd)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas fluorescens F113
GCF_000237065.1|latest
Locus Tag
PSF113_5886
Name
gmd
Replicon chromosome
Genomic location 6803992 - 6804960 (+ strand)

Cross-References

RefSeq YP_005211255.1
GI 378953767
EC Number 4.2.1.47
Entrez 11834008
INSDC AEV65860.1
NCBI Locus Tag PSF113_5886
UniParc UPI00023B3F8F
UniProtKB Acc G8Q875
UniProtKB ID G8Q875_PSEFL
UniRef100 UniRef100_G8Q875
UniRef50 UniRef50_Q51366
UniRef90 UniRef90_Q3K486

Product

Feature Type CDS
Coding Frame 1
Product Name
protein Gmd
Synonyms
Evidence for Translation
Charge (pH 7) -2.17
Kyte-Doolittle Hydrophobicity Value -0.210
Molecular Weight (kDa) 36216.1
Isoelectric Point (pI) 6.52

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 610 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004999 (389 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSF113_5886
Search term: gmd
Search term: protein Gmd

Human Homologs

Ensembl 97, assembly GRCh38.p12
GDP-mannose 4,6-dehydratase [Source:HGNC Symbol;Acc:HGNC:4369]
E-value: 8.0e-84
Percent Identity: 47.2

References

No references are associated with this feature.